Mark D. Yandell: search on Z-Library

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1

A beginner's guide to eukaryotic genome annotation

Yandell, Mark, Ence, Daniel

Journal:

Nature Reviews Genetics

Year:

2012

Language:

english

File:

PDF, 502 KB

english, 2012

2

Settling the score: variant prioritization and Mendelian disease

Eilbeck, Karen, Quinlan, Aaron, Yandell, Mark

Journal:

Nature Reviews Genetics

Year:

2017

Language:

english

File:

PDF, 529 KB

english, 2017

3

Evidence for extensive horizontal gene transfer from the draft genome of a tardigrade

Boothby, Thomas C., Tenlen, Jennifer R., Smith, Frank W., Wang, Jeremy R., Patanella, Kiera A., Osborne Nishimura, Erin, Tintori, Sophia C., Li, Qing, Jones, Corbin D., Yandell, Mark, Messina, David N

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 1.20 MB

english, 2015

4

Primary Ovarian Insufficiency and Azoospermia in Carriers of a Homozygous PSMC3IP Stop Gain Mutation

Al-Agha, Abdulmoein Eid, Ahmed, Ihab Abdulhamed, Nuebel, Esther, Moriwaki, Mika, Moore, Barry, Peacock, Katherine A, Mosbruger, Tim, Neklason, Deborah W, Jorde, Lynn B, Yandell, Mark, Welt, Corrine K

Journal:

Journal of Clinical Endocrinology & Metabolism

Year:

2018

Language:

english

File:

PDF, 467 KB

english, 2018

5

Elucidation of the molecular envenomation strategy of the cone snailConus geographusthrough transcriptome sequencing of its venom duct

Hu, Hao, Bandyopadhyay, Pradip K, Olivera, Baldomero M, Yandell, Mark

Journal:

Year:

2012

Language:

english

File:

PDF, 834 KB

english, 2012

6

CAUSAL GRAPHICAL MODELS IN SYSTEMS GENETICS: A UNIFIED FRAMEWORK FOR JOINT INFERENCE OF CAUSAL NETWORK AND GENETIC ARCHITECTURE FOR CORRELATED PHENOTYPES

Elias Chaibub Neto, Mark P. Keller, Alan D. Attie and Brian S. Yandell

Journal:

The Annals of Applied Statistics

Year:

2010

Language:

english

File:

PDF, 1.74 MB

english, 2010

7

Unbiased Detection of Respiratory Viruses Using RNA-seq-Based Metagenomics: A Systematic Comparison to A Commercial PCR Panel

Graf, Erin H., Simmon, Keith E., Tardif, Keith D., Hymas, Weston, Flygare, Steven, Eilbeck, Karen, Yandell, Mark, Schlaberg, Robert

Journal:

Journal of Clinical Microbiology

Year:

2016

Language:

english

File:

PDF, 1.51 MB

english, 2016

8

The VAAST Variant Prioritizer (VVP): ultrafast, easy to use whole genome variant prioritization tool

Flygare, Steven, Hernandez, Edgar Javier, Phan, Lon, Moore, Barry, Li, Man, Fejes, Anthony, Hu, Hao, Eilbeck, Karen, Huff, Chad, Jorde, Lynn, G. Reese, Martin, Yandell, Mark

Journal:

BMC Bioinformatics

Year:

2018

Language:

english

File:

PDF, 1.07 MB

english, 2018

9

Antimicrobial Functions of Lactoferrin Promote Genetic Conflicts in Ancient Primates and Modern Humans

Barber, Matthew F., Kronenberg, Zev, Yandell, Mark, Elde, Nels C., Zhang, Jianzhi

Journal:

Year:

2016

Language:

english

File:

PDF, 2.90 MB

english, 2016

10

Characterization of theConus bullatusgenome and its venom-duct transcriptome

Hao Hu, Pradip K Bandyopadhyay, Baldomero M Olivera, Mark Yandell

Journal:

Year:

2011

Language:

english

File:

PDF, 1.75 MB

english, 2011

11

10.1038/70570

Marth, Gabor T., Kwok, Pui-Yan, Korf, Ian, Yandell, Mark D., Yeh, Raymond T., Gu, Zhijie, Zakeri, Hamideh, Stitziel, Nathan O., Hillier, LaDeana, Gish, Warren R.

Journal:

Nature Genetics

Year:

1999

Language:

english

File:

PDF, 125 KB

english, 1999

12

Quantitative measures for the management and comparison of annotated genomes

Karen Eilbeck, Barry Moore, Carson Holt, Mark Yandell

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 1.51 MB

english, 2009

13

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

Carson Holt, Mark Yandell

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 392 KB

english, 2011

14

ThePinus taedagenome is characterized by diverse and highly diverged repetitive sequences

Allen Kovach, Jill L Wegrzyn, Genis Parra, Carson Holt, George E Bruening, Carol A Loopstra, James Hartigan, Mark Yandell, Charles H Langley, Ian Korf, David B Neale

Journal:

Year:

2010

Language:

english

File:

PDF, 2.22 MB

english, 2010

15

Improved repeat identification and masking in Dipterans

Christopher D. Smith, Robert C. Edgar, Mark D. Yandell, Douglas R. Smith, Susan E. Celniker, Eugene W. Myers, Gary H. Karpen

Journal:

Year:

2007

Language:

english

File:

PDF, 374 KB

english, 2007

16

A Quantitative Map of the Liver Mitochondrial Phosphoproteome Reveals Posttranslational Control of Ketogenesis

Paul A. Grimsrud, Joshua J. Carson, Alex S. Hebert, Shane L. Hubler, Natalie M. Niemi, Derek J. Bailey, Adam Jochem, Donald S. Stapleton, Mark P. Keller, Michael S. Westphall, Brian S. Yandell, Alan D

Journal:

Cell Metabolism

Year:

2012

Language:

english

File:

PDF, 2.05 MB

english, 2012

17

Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution

Smith, Jeramiah J, Kuraku, Shigehiro, Holt, Carson, Sauka-Spengler, Tatjana, Jiang, Ning, Campbell, Michael S, Yandell, Mark D, Manousaki, Tereza, Meyer, Axel, Bloom, Ona E, Morgan, Jennifer R, Buxbau

Journal:

Nature Genetics

Year:

2013

Language:

english

File:

PDF, 1.03 MB

english, 2013

18

The Sequence Ontology: a tool for the unification of genome annotations

Karen Eilbeck, Suzanna E Lewis, Christopher J Mungall, Mark Yandell…

Journal:

Year:

2005

Language:

english

File:

PDF, 299 KB

english, 2005

19

Use of Multivariate Discriminant Analysis of Male Wing Morphometrics to Delineate a Hybrid Zone for Papilio glaucus glaucus and P. g. canadensis in Wisconsin

Heidi J. Luebke, J. Mark Scriber and Brian S. Yandell

Journal:

American Midland Naturalist

Year:

1988

Language:

english

File:

PDF, 1.23 MB

english, 1988

20

Characterization of the peptidylglycine α-amidating monooxygenase (PAM) from the venom ducts of neogastropods, Conus bullatus and Conus geographus

Ul-Hasan, Sabah, Burgess, Daniel M., Gajewiak, Joanna, Li, Qing, Hu, Hao, Yandell, Mark, Olivera, Baldomero M., Bandyopadhyay, Pradip K.

Journal:

Year:

2013

Language:

english

File:

PDF, 2.14 MB

english, 2013

21

Pharmacogenomics of 17-alpha hydroxyprogesterone caproate for recurrent preterm birth prevention

Manuck, Tracy A., Watkins, W. Scott, Moore, Barry, Esplin, M. Sean, Varner, Michael W., Jackson, G. Marc, Yandell, Mark, Jorde, Lynn

Journal:

American Journal of Obstetrics and Gynecology

Year:

2014

Language:

english

File:

PDF, 1.44 MB

english, 2014

22

Autoimmunity due to RAG deficiency and estimated disease incidence in RAG1/2 mutations

Chen, Karin, Wu, Wilfred, Mathew, Divij, Zhang, Yuhua, Browne, Sarah K., Rosen, Lindsey B., McManus, Meghann P., Pulsipher, Michael A., Yandell, Mark, Bohnsack, John F., Jorde, Lynn B., Notarangelo, L

Journal:

Journal of Allergy and Clinical Immunology

Year:

2014

Language:

english

File:

PDF, 1.30 MB

english, 2014

23

9: Genetic variation in key biologic processes may influence response to 17-alpha hydroxyprogesterone caproate (17P) for recurrent preterm birth (PTB) prevention

Manuck, Tracy, Watkins, Scott, Esplin, M. Sean, Varner, Michael, Jackson, G. Marc, Moore, Barry, Yandell, Mark, Jorde, Lynn

Journal:

American Journal of Obstetrics and Gynecology

Year:

2014

Language:

english

File:

PDF, 302 KB

english, 2014

24

Epistatic and Combinatorial Effects of Pigmentary Gene Mutations in the Domestic Pigeon

Domyan, Eric T., Guernsey, Michael W., Kronenberg, Zev, Krishnan, Shreyas, Boissy, Raymond E., Vickrey, Anna I., Rodgers, Clifford, Cassidy, Pamela, Leachman, Sancy A., Fondon, John W., Yandell, Mark,

Journal:

Current Biology

Year:

2014

Language:

english

File:

PDF, 1.53 MB

english, 2014

25

An improved genome release (version Mt4.0) for the model legume Medicago truncatula

Tang, Haibao, Krishnakumar, Vivek, Bidwell, Shelby, Rosen, Benjamin, Chan, Agnes, Zhou, Shiguo, Gentzbittel, Laurent, Childs, Kevin L, Yandell, Mark, Gundlach, Heidrun, Mayer, Klaus FX, Schwartz, Davi

Journal:

Year:

2014

Language:

english

File:

PDF, 1.73 MB

english, 2014

26

FoxM1 Is Up-Regulated by Obesity and Stimulates β-Cell Proliferation

Davis, Dawn Belt, Lavine, Jeremy A., Suhonen, Joshua I., Krautkramer, Kimberly A., Rabaglia, Mary E., Sperger, Jamie M., Fernandez, Luis A., Yandell, Brian S., Keller, Mark P., Wang, I-Ming, Schadt, E

Journal:

Molecular Endocrinology

Year:

2010

Language:

english

File:

PDF, 593 KB

english, 2010

27

Radioiodine Studies, Low Serum Thyrotropin, and the Influence of Statin Drugs

Yandell, Seth D., Harvey, William C., Fernandes, Neil J., Barr, Patrick W., Feldman, Mark

Journal:

Year:

2008

Language:

english

File:

PDF, 79 KB

english, 2008

28

ImagePlane: An Automated Image Analysis Pipeline for High-Throughput Screens Using the Planarian Schmidtea mediterranea

Flygare, Steven, Campbell, Michael, Ross, Robert Mars, Moore, Barry, Yandell, Mark

Journal:

Journal of Computational Biology

Year:

2013

Language:

english

File:

PDF, 272 KB

english, 2013

29

VAAST 2.0: Improved Variant Classification and Disease-Gene Identification Using a Conservation-Controlled Amino Acid Substitution Matrix

Hu, Hao, Huff, Chad D., Moore, Barry, Flygare, Steven, Reese, Martin G., Yandell, Mark

Journal:

Genetic Epidemiology

Year:

2013

Language:

english

File:

PDF, 927 KB

english, 2013

30

Muscle stem cells contribute to myofibres in sedentary adult mice

Keefe, Alexandra C., Lawson, Jennifer A., Flygare, Steven D., Fox, Zachary D., Colasanto, Mary P., Mathew, Sam J., Yandell, Mark, Kardon, Gabrielle

Journal:

Nature Communications

Year:

2015

Language:

english

File:

PDF, 3.34 MB

english, 2015

31

Transposable Elements Are Major Contributors to the Origin, Diversification, and Regulation of Vertebrate Long Noncoding RNAs

Kapusta, Aurélie, Kronenberg, Zev, Lynch, Vincent J., Zhuo, Xiaoyu, Ramsay, LeeAnn, Bourque, Guillaume, Yandell, Mark, Feschotte, Cédric, Hoekstra, Hopi E.

Journal:

Year:

2013

Language:

english

File:

PDF, 5.04 MB

english, 2013

32

Genome-Wide Analysis of Human Disease Alleles Reveals That Their Locations Are Correlated in Paralogous Proteins

Yandell, Mark, Moore, Barry, Salas, Fidel, Mungall, Chris, MacBride, Andrew, White, Charles, Reese, Martin G., Eisenberg, David

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 164 KB

english, 2008

33

TBX3 Regulates Splicing In Vivo: A Novel Molecular Mechanism for Ulnar-Mammary Syndrome

Kumar P., Pavan, Franklin, Sarah, Emechebe, Uchenna, Hu, Hao, Moore, Barry, Lehman, Chris, Yandell, Mark, Moon, Anne M., Barsh, Gregory S.

Journal:

Year:

2014

Language:

english

File:

PDF, 2.27 MB

english, 2014

34

Large-Scale Trends in the Evolution of Gene Structures within 11 Animal Genomes

Yandell, Mark, Mungall, Chris J., Smith, Chris, Prochnik, Simon, Kaminker, Joshua, Hartzell, George, Lewis, Suzanna, Rubin, Gerald M.

Journal:

PLoS Computational Biology

Year:

2006

Language:

english

File:

PDF, 487 KB

english, 2006

35

Genetic Networks of Liver Metabolism Revealed by Integration of Metabolic and Transcriptional Profiling

Ferrara, Christine T., Wang, Ping, Neto, Elias Chaibub, Stevens, Robert D., Bain, James R., Wenner, Brett R., Ilkayeva, Olga R., Keller, Mark P., Blasiole, Daniel A., Kendziorski, Christina, Yandell,

Journal:

Year:

2008

Language:

english

File:

PDF, 912 KB

english, 2008

36

Hormone-like peptides in the venoms of marine cone snails

Robinson, Samuel D., Li, Qing, Bandyopadhyay, Pradip K., Gajewiak, Joanna, Yandell, Mark, Papenfuss, Anthony T., Purcell, Anthony W., Norton, Raymond S., Safavi-Hemami, Helena

Journal:

General and Comparative Endocrinology

Year:

2015

Language:

english

File:

PDF, 2.33 MB

english, 2015

37

Transiently Active Wnt/β-Catenin Signaling Is Not Required but Must Be Silenced for Stem Cell Function during Muscle Regeneration

Murphy, Malea M., Keefe, Alexandra C., Lawson, Jennifer A., Flygare, Steven D., Yandell, Mark, Kardon, Gabrielle

Journal:

Stem Cell Reports

Year:

2014

Language:

english

File:

PDF, 7.86 MB

english, 2014

38

Global analysis of disease-related DNA sequence variation in 10 healthy individuals: Implications for whole genome-based clinical diagnostics

Moore, Barry, Hu, Hao, Singleton, Marc, De La Vega, Francisco M, Reese, Martin G, Yandell, Mark

Journal:

Genetics in Medicine

Year:

2011

Language:

english

File:

PDF, 342 KB

english, 2011

39

A System for Assaying Homologous Recombination at the Endogenous Human Thymidine Kinase Gene

Mark B. Benjamin, Huntington Potter, David W. Yandell and John B. Little

Journal:

Proceedings of the National Academy of Sciences

Year:

1991

Language:

english

File:

PDF, 954 KB

english, 1991

40

Draft genome of the red harvester ant Pogonomyrmex barbatus

Chris R. Smith, Christopher D. Smith, Hugh M. Robertson, Martin Helmkampf, Aleksey Zimin, Mark Yandell, Carson Holt, Hao Hu, Ehab Abouheif, Richard Benton, Elizabeth Cash, Vincent Croset, Cameron R. C

Journal:

Proceedings of the National Academy of Sciences

Year:

2011

Language:

english

File:

PDF, 1.39 MB

english, 2011

41

Rapid expansion of the protein disulfide isomerase gene family facilitates the folding of venom peptides

Safavi-Hemami, Helena, Li, Qing, Jackson, Ronneshia L., Song, Albert S., Boomsma, Wouter, Bandyopadhyay, Pradip K., Gruber, Christian W., Purcell, Anthony W., Yandell, Mark, Olivera, Baldomero M., Ell

Journal:

Proceedings of the National Academy of Sciences

Year:

2016

Language:

english

File:

PDF, 1.66 MB

english, 2016

42

Venom Insulins of Cone Snails Diversify Rapidly and Track Prey Taxa

Safavi-Hemami, Helena, Lu, Aiping, Li, Qing, Fedosov, Alexander E., Biggs, Jason, Showers Corneli, Patrice, Seger, Jon, Yandell, Mark, Olivera, Baldomero M.

Journal:

Molecular Biology and Evolution

Year:

2016

Language:

english

File:

PDF, 1.53 MB

english, 2016

43

Trimethylpsoralen Induces Small Deletion Mutations in Caenorhabditis elegans

Mark D. Yandell, Lois G. Edgar and William B. Wood

Journal:

Proceedings of the National Academy of Sciences

Year:

1994

Language:

english

File:

PDF, 974 KB

english, 1994

44

The draft genome sequence and annotation of the desert woodrat Neotoma lepida

Campbell, Michael, Oakeson, Kelly F., Yandell, Mark, Halpert, James R., Dearing, Denise

Journal:

Year:

2016

Language:

english

File:

PDF, 166 KB

english, 2016

45

Causal graphical models in systems genetics: A unified framework for joint inference of causal network and genetic architecture for correlated phenotypes

Chaibub Neto, Elias, Keller, Mark P., Attie, Alan D., Yandell, Brian S.

Journal:

The Annals of Applied Statistics

Year:

2010

Language:

english

File:

PDF, 273 KB

english, 2010

46

Emergence of a Viral RNA Polymerase Variant during Gene Copy Number Amplification Promotes Rapid Evolution of Vaccinia Virus

Cone, Kelsey R., Kronenberg, Zev N., Yandell, Mark, Elde, Nels C., McFadden, Grant

Journal:

Journal of Virology

Year:

2017

Language:

english

File:

PDF, 2.16 MB

english, 2017

47

High-throughput interpretation of gene structure changes in human and nonhuman resequencing data, using ACE

Majoros, William H., Campbell, Michael S., Holt, Carson, DeNardo, Erin, Ware, Doreen, Allen, Andrew S., Yandell, Mark, Reddy, Timothy E.

Journal:

Year:

2016

Language:

english

File:

PDF, 597 KB

english, 2016

48

Host Genotype and Gut Microbiome Modulate Insulin Secretion and Diet-Induced Metabolic Phenotypes

Kreznar, Julia H., Keller, Mark P., Traeger, Lindsay L., Rabaglia, Mary E., Schueler, Kathryn L., Stapleton, Donald S., Zhao, Wen, Vivas, Eugenio I., Yandell, Brian S., Broman, Aimee Teo, Hagenbuch, B

Journal:

Year:

2017

Language:

english

File:

PDF, 2.93 MB

english, 2017

49

VARPRISM: incorporating variant prioritization in tests ofde novomutation association

Hu, Hao, Coon, Hilary, Li, Man, Yandell, Mark, Huff, Chad D.

Journal:

Genome Medicine

Year:

2016

Language:

english

File:

PDF, 690 KB

english, 2016

50

Viral Pathogen Detection by Metagenomics and Pan Viral Group PCR in Children with Pneumonia Lacking Identifiable Etiology

Schlaberg, Robert, Queen, Krista, Simmon, Keith, Tardif, Keith, Stockmann, Chris, Flygare, Steven, Kennedy, Brett, Voelkerding, Karl, Bramley, Anna, Zhang, Jing, Eilbeck, Karen, Yandell, Mark, Jain, S

Journal:

The Journal of Infectious Diseases

Year:

2017

Language:

english

File:

PDF, 623 KB

english, 2017